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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Research Website
About me
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Posts
Future Blog Post
Published:
This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.
Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
misc
HERCULES: a three-arm noninferiority trial of a anti-HER2 cancer vaccine
Published:
Mock clinical trial protocol developed for Design of Medical studies course.
Reproducing: Sharp Instruments for Classifying Compliers and Generalizing Causal Effects
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Reproducing a paper on instrumental variables by Ed Kennedy and Colleagues.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
Genomic Occupancy of the Bromodomain Protein Bdf3 Is Dynamic during Differentiation of African Trypanosomes from Bloodstream to Procyclic Forms
Published in MSphere, 2022
Cut&Run data analysis demonstrates Bdf3 protein occupancy changes at different sites on the T. brucei genome.
Recommended citation: Ashby, Ethan, et al. (2022). "Genomic Occupancy of the Bromodomain Protein Bdf3 Is Dynamic during Differentiation of African Trypanosomes from Bloodstream to Procyclic Forms." MSphere . 7(3). https://journals.asm.org/doi/full/10.1128/msphere.00023-22
The timing of transcription of RpoS-dependent genes varies across multiple stresses in Escherichia coli K-12
Published in mSystems, 2023
This paper examines the timing of E. coli transcriptional response to different stresses.
Recommended citation: Adams, Josephine, et al. (2023). "The timing of transcription of RpoS-dependent genes varies across multiple stresses in Escherichia coli K-12." mSystems. https://www.biorxiv.org/content/biorxiv/early/2023/06/26/2023.02.17.528066.full.pdf
Chemical Inhibition of Bromodomain Proteins in Insect-Stage African Trypanosomes Perturbs Silencing of the Variant Surface Glycoprotein Repertoire and Results in Widespread Changes in the Transcriptome
Published in Microbiology Spectrum, 2023
Investigating time-course transcriptional response to Bdf3 inhibition in the parasite that causes sleeping sickness.
Recommended citation: Ashby, Ethan C. (2023). "Chemical Inhibition of Bromodomain Proteins in Insect-Stage African Trypanosomes Perturbs Silencing of the Variant Surface Glycoprotein Repertoire and Results in Widespread Changes in the Transcriptome." Microbiology Spectrum. 1(1). https://journals.asm.org/doi/full/10.1128/spectrum.00147-23
Negative Control Outcome Adjustment in Early-Phase Randomized Trials: Estimating Vaccine Effects on Immune Responses in HIV Exposed Uninfected Infants
Published in arXiv, 2024
Adjustment for off-target endpoints can improve the efficiency of early-phase randomized trials.
Recommended citation: Ashby, Ethan, et al. (2024). "Negative Control Outcome Adjustment in Early-Phase Randomized Trials: Estimating Vaccine Effects on Immune Responses in HIV Exposed Uninfected Infants." ArXiv. https://arxiv.org/abs/2410.08078
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching Materials (BIOST 537 – Survival Analysis)
TA Winter 2024, , 1900
See here for lecture materials I created for weekly lecture for Survival Analysis course!
Theory Exam Study Materials
Teaching materials, , 1900
Here are my study materials that I created in preparation for UW Biostat’s 2nd year theory exam! Hope it is useful to folks as they prepare for their own exams!